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abyss
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ad2vcf
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artemis
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atac-seq
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augustus
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avida
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babel
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bamtools
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bamutil
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barrnap
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bbmap
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bcf-score
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bcftools
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bedtools
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bfc
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bifrost
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bio-mocha
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bioawk
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biococoa
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biolibc
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biolibc-tools
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bioparser
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biosig
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biology/{,py-}biosig: update 2.5.2 → 2.6.0
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2024-04-05 18:04:45 -07:00 |
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biosoup
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biostar-tools
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bolt-lmm
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bowtie
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bowtie2
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btllib
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biology/btllib: update 1.7.1 → 1.7.2
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2024-04-09 00:40:58 -07:00 |
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bwa
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canu
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cd-hit
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cdbfasta
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checkm
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chip-seq
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clustal-omega
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clustalw
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cufflinks
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cytoscape
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ddocent
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diamond
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dsr-pdb
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edlib
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emboss
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erminej
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exonerate
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fasda
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fasta
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fasta3
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fastahack
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fastdnaml
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fastool
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fastp
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fastq-trim
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fastqc
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fasttree
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fastx-toolkit
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figtree
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flash
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fluctuate
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freebayes
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garlic
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gatk
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gcta
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gemma
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generand
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gff2ps
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gffread
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gmap
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gperiodic
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graphlan
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groopm
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haplohseq
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hhsuite
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hisat2
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hmmer
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htslib
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hyphy
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biology/hyphy: Update to 2.5.60
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2024-04-14 18:14:19 -03:00 |
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igv
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infernal
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iolib
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iqtree
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biology/iqtree: Update to 2.3.2
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2024-04-14 16:38:43 -03:00 |
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jalview
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jellyfish
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kallisto
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kmcp
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all: Bump after lang/go121 update
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2024-04-15 08:20:04 +00:00 |
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lamarc
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libbigwig
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libcombine
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libgff
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libgtextutils
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libneurosim
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libnuml
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libsbml
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libsedml
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linux-foldingathome
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locarna
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mafft
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mapm3
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mashmap
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megahit
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metaeuk
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migrate
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biology/migrate: Use system zlib instead of excluding it from extract
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2024-04-12 21:07:33 +01:00 |
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minimap2
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biology/minimap2: Update to 2.28
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2024-04-10 07:28:02 -05:00 |
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mmseqs2
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molden
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mothur
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mrbayes
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mummer
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muscle
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ncbi-blast+
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ncbi-cxx-toolkit
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graphics/proj: Update to 9.4.0
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2024-04-15 06:44:23 +02:00 |
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ncbi-entrez-direct
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all: Bump after lang/go121 update
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2024-04-15 08:20:04 +00:00 |
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ncbi-toolkit
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ncbi-vdb
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ngs-sdk
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p5-AcePerl
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p5-Bio-ASN1-EntrezGene
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p5-Bio-Cluster
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p5-Bio-Coordinate
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p5-Bio-Das
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p5-Bio-Das-Lite
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p5-Bio-DB-EMBL
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p5-Bio-DB-NCBIHelper
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p5-Bio-FeatureIO
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p5-Bio-GFF3
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p5-Bio-Glite
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p5-Bio-Graphics
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p5-Bio-MAGETAB
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p5-Bio-NEXUS
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p5-Bio-Phylo
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p5-Bio-SCF
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p5-Bio-Variation
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p5-BioPerl
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p5-BioPerl-Run
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p5-transdecoder
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p5-TrimGalore
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biology/p5-TrimGalore: Release to ports@
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2024-04-05 19:12:17 -05:00 |
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paml
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pbbam
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pbseqan
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biology/pbseqan: Set EXPIRATION_DATE
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2024-04-04 18:35:51 +02:00 |
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peak-classifier
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biology/peak-classifier: Clean up USES=python
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2024-04-05 08:43:40 +08:00 |
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pear-merger
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phrap
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phred
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phyml
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picard-tools
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plink
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pooler
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primer3
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prodigal
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prodigy-lig
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protomol
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psi88
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py-bcbio-gff
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py-biom-format
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py-biopython
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biology/py-biopython: Update to 1.83
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2024-04-08 02:29:37 +00:00 |
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py-biosig
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biology/{,py-}biosig: update 2.5.2 → 2.6.0
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2024-04-05 18:04:45 -07:00 |
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py-bx-python
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py-crossmap
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py-cutadapt
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biology/py-cutadapt: Release to ports@
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2024-04-05 19:12:16 -05:00 |
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py-deeptools
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py-deeptoolsintervals
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py-dna-features-viewer
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py-dnaio
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biology/py-dnaio: Release to ports@
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2024-04-10 18:41:31 -05:00 |
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py-ete3
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py-Genesis-PyAPI
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py-gffutils
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py-goatools
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py-gtfparse
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py-hits
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py-htseq
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py-libnuml
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py-libsedml
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py-loompy
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py-macs2
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py-macs3
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py-mrcfile
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py-multiqc
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py-newick
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py-ont-fast5-api
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py-orange3-bioinformatics
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py-orange3-single-cell
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py-pandas-charm
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py-py2bit
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py-pybigwig
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py-pyfaidx
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py-pyrodigal
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py-pysam
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py-PySCeS
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py-python-libsbml
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py-pywgsim
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py-resdk
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biology/py-resdk: update 20.0.0 → 21.1.0
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2024-04-05 18:04:45 -07:00 |
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py-scikit-bio
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biology/py-scikit-bio: update 0.5.9 → 0.6.0
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2024-04-05 18:04:46 -07:00 |
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py-valerius
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py-xenaPython
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pyfasta
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python-nexus
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R-cran-Biobase
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R-cran-BiocGenerics
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R-cran-BiocManager
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rainbow
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rampler
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readseq
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rna-seq
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ruby-bio
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rubygem-bio
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rubygem-bio-executables
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rubygem-bio-old-biofetch-emulator
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rubygem-bio-shell
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salmon
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devel/onetbb: Update to 2021.12.0
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2024-04-17 13:28:34 +02:00 |
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sam2pairwise
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samtools
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scrm
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seaview
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seqan
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seqan-apps
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seqan1
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seqan3
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seqkit
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all: Bump after lang/go121 update
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2024-04-15 08:20:04 +00:00 |
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seqtk
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seqwish
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sigviewer
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slclust
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smithwaterman
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snpeff
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spoa
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biology/spoa: Broken on i386
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2024-04-11 21:05:12 -07:00 |
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sra-tools
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cleanup: remove occurrences of WITH_DEBUG
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2024-04-12 08:04:05 +02:00 |
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stacks
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star
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stringtie
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subread
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tabixpp
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taxonkit
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all: Bump after lang/go121 update
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2024-04-15 08:20:04 +00:00 |
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treekin
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treepuzzle
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trimadap
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trimmomatic
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biology/trimmomatic: Release to ports@
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2024-04-05 19:12:17 -05:00 |
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tRNAscan-SE
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ucsc-userapps
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ugene
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unikmer
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all: Bump after lang/go121 update
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2024-04-15 08:20:04 +00:00 |
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vcf-split
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vcf2hap
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vcflib
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vcftools
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velvet
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viennarna
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vsearch
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biology/vsearch: Update to 2.27.1
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2024-04-08 16:43:20 -05:00 |
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vt
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wfa2-lib
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wise
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Makefile
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