63e5ba4396
Patch function pointer assignments that went from warning to error with the compiler upgrade Reported by: pkg-fallout
53 lines
1.5 KiB
Makefile
53 lines
1.5 KiB
Makefile
PORTNAME= bcf-score
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DISTVERSION= 1.16
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PORTREVISION= 1
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CATEGORIES= biology
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MASTER_SITES= https://software.broadinstitute.org/software/score/
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DISTFILES+= score_${DISTVERSION}-20221221.tar.gz
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MAINTAINER= jwb@FreeBSD.org
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COMMENT= Bcftools plugins for GWAS-VCF summary statistics files
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WWW= https://software.broadinstitute.org/software/score/
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LICENSE= MIT
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LIB_DEPENDS= libhts.so:biology/htslib
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BUILD_DEPENDS= bash:shells/bash
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RUN_DEPENDS= bcftools>=${PORTVERSION}:biology/bcftools
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USES= autoreconf gmake localbase perl5 python:env shebangfix
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USE_GITHUB= yes
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USE_PERL5= test
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GH_ACCOUNT= samtools
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GH_PROJECT= bcftools
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GH_TAGNAME= 1.17
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GNU_CONFIGURE= yes
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SHEBANG_FILES= misc/* test/test.pl
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post-extract:
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@${CP} ${WRKDIR}/*.c ${WRKDIR}/*.h ${WRKSRC}/plugins
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@${MKDIR} ${WRKSRC}/bcf-score
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@${CP} ${WRKDIR}/*.R ${WRKSRC}/bcf-score
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pre-configure:
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@${REINPLACE_CMD} -e 's|@PORTVERSION@|${PORTVERSION}|g' \
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${WRKSRC}/configure.ac
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# One .so for each .c in the score distfile
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do-install:
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${MKDIR} ${STAGEDIR}${PREFIX}/libexec/bcftools
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${INSTALL_PROGRAM} ${WRKSRC}/plugins/blupx.so \
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${STAGEDIR}${PREFIX}/libexec/bcftools
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${INSTALL_PROGRAM} ${WRKSRC}/plugins/liftover.so \
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${STAGEDIR}${PREFIX}/libexec/bcftools
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${INSTALL_PROGRAM} ${WRKSRC}/plugins/metal.so \
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${STAGEDIR}${PREFIX}/libexec/bcftools
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${INSTALL_PROGRAM} ${WRKSRC}/plugins/munge.so \
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${STAGEDIR}${PREFIX}/libexec/bcftools
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${INSTALL_PROGRAM} ${WRKSRC}/plugins/score.so \
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${STAGEDIR}${PREFIX}/libexec/bcftools
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(cd ${WRKSRC}/bcf-score && ${COPYTREE_SHARE} . ${STAGEDIR}${DATADIR})
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.include <bsd.port.mk>
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