20 lines
949 B
Plaintext
20 lines
949 B
Plaintext
Biostar-Tools is a metaport for installing all the tools necessary to
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work through the Biostar Handbook, except for bedGrapToBigWig, which
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has license restrictions. If you need bedGraphToBigWig, run
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cd /usr/ports/biology/ucsc-userapps && make install clean
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The handbook instructs the reader to install these tools mostly via
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bioconda, which then requires the user to activate the bioconda
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environment each time they want to use the tools. You can also
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install conda packages on FreeBSD if you wish. For details, see
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/usr/ports/sysutils/linux-miniconda-installer/pkg-descr
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This meta-package installs all of the tools except emboss to the
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default PATH (normally /usr/local/bin) so they just work without any
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special environment. Emboss commands are installed to
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/usr/local/emboss/bin due to conflicts with other packages. Run
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"biostar-shell" to add the emboss commands to your PATH, and simply
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exit the shell to return your PATH to normal.
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