59 lines
1.7 KiB
Makefile
59 lines
1.7 KiB
Makefile
PORTNAME= infernal
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PORTVERSION= 1.1.4
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PORTREVISION= 1
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CATEGORIES= biology
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MASTER_SITES= http://eddylab.org/infernal/
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MAINTAINER= mzaki@e-mail.ne.jp
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COMMENT= Search sequence databases for structural RNA homologs
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WWW= http://eddylab.org/infernal/
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LICENSE= BSD3CLAUSE
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LICENSE_FILE= ${WRKSRC}/LICENSE
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ONLY_FOR_ARCHS= amd64 i386 powerpc powerpc64 powerpc64le powerpcspe
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ONLY_FOR_ARCHS_REASON= requires SSE2 or AltiVec instructions
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USES= compiler:c11 gmake perl5 python:test shebangfix
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USE_PERL5= test
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SHEBANG_FILES= easel/devkit/*
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SHEBANG_GLOB= *.pl *.py
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GNU_CONFIGURE= yes
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GNU_CONFIGURE_MANPREFIX=${PREFIX}/share
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MAKE_ARGS= V=1
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TEST_TARGET= check
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OPTIONS_DEFINE= DOCS EXAMPLES TEST
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DOCFILES= Userguide.pdf
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EXAMPLES= 5S_rRNA.c.cm 5S_rRNA.sto \
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Cobalamin.c.cm Cobalamin.fa Cobalamin.sto \
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metag-example.fa minifam-metag.out minifam.cm \
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minifam.cm.i1f minifam.cm.i1i minifam.cm.i1m minifam.cm.i1p \
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mrum-genome.fa mrum-tRNAs10.fa mrum-tRNAs10.out \
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tRNA5-hand.c.cm tRNA5-hand.sto tRNA5-mrum.out \
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tRNA5-noss.sto tRNA5.c.cm tRNA5.sto
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TEST_BUILD_DEPENDS= ${PYTHON_VERSION}:lang/python${PYTHON_SUFFIX}
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TEST_VARS= use_perl5=build
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post-build-TEST-on: pre-test do-test
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post-install:
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@${STRIP_CMD} ${STAGEDIR}${PREFIX}/bin/*
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post-install-DOCS-on:
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@${MKDIR} ${STAGEDIR}${DOCSDIR}
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${INSTALL_DATA} ${DOCFILES:S,^,${WRKSRC}/,} ${STAGEDIR}${DOCSDIR}
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post-install-EXAMPLES-on:
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@${MKDIR} ${STAGEDIR}${EXAMPLESDIR}
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${INSTALL_DATA} ${EXAMPLES:S,^,${WRKSRC}/tutorial/,} ${STAGEDIR}${EXAMPLESDIR}
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pre-test:
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${FIND} ${WRKSRC} -type f \( -name Makefile -or -name sqc \) -exec ${GREP} -q 'python3 ' {} \; -print | ${XARGS} ${SED} -i.bak 's/python3 /${PYTHON_VERSION} /'
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.include <bsd.port.mk>
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