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Salmon is a wicked-fast program to produce a highly-accurate, transcript-level quantification estimates from RNA-seq data. Salmon achieves is accuracy and speed via a number of different innovations, including the use of quasi-mapping (accurate but fast-to-compute proxies for traditional read alignments), and massively-parallel stochastic collapsed variational inference. The result is a versatile tool that fits nicely into many differnt pipelines.
19 lines
451 B
Plaintext
19 lines
451 B
Plaintext
--- src/CMakeLists.txt.orig 2021-11-23 02:42:29 UTC
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+++ src/CMakeLists.txt
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@@ -266,14 +266,7 @@ endif()
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add_dependencies(salmon unitTests)
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-##
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-# External dependencies of salmon_core and salmon
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-##
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-if (${FETCHED_JEMALLOC})
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- add_dependencies(alevin_core libjemalloc)
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- add_dependencies(salmon_core libjemalloc)
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- add_dependencies(salmon libjemalloc)
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-endif()
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+# jemalloc is default on FreeBSD
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if (${FETCHED_BOOST})
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## PUFF_INTEGRATION
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