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Jason W. Bacon 0f2f80ca38 biology/sra-tools: Update to 3.0.6 
Major code and build system rework since 2.11
Now supports aarch64, unblocking rna-seq and atac-seq metaports
Changes: https://github.com/ncbi/sra-tools/commits/master

Reported by:    portscout
2023-08-10 12:17:24 -05:00

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bin/abi-dump
bin/abi-dump.3
bin/abi-dump.3.0.6
bin/align-info
bin/align-info.3
bin/align-info.3.0.6
bin/cache-mgr
bin/cache-mgr.3
bin/cache-mgr.3.0.6
bin/check-corrupt
bin/check-corrupt.3
bin/check-corrupt.3.0.6
bin/fasterq-dump
bin/fasterq-dump-orig.3.0.6
bin/fasterq-dump.3
bin/fasterq-dump.3.0.6
bin/fastq-dump
bin/fastq-dump-orig.3.0.6
bin/fastq-dump.3
bin/fastq-dump.3.0.6
bin/illumina-dump
bin/illumina-dump.3
bin/illumina-dump.3.0.6
bin/kdbmeta
bin/kdbmeta.3
bin/kdbmeta.3.0.6
bin/ngs-pileup
bin/ngs-pileup.3
bin/ngs-pileup.3.0.6
bin/prefetch
bin/prefetch-orig.3.0.6
bin/prefetch.3
bin/prefetch.3.0.6
bin/rcexplain
bin/rcexplain.3
bin/rcexplain.3.0.6
bin/ref-variation
bin/ref-variation.3
bin/ref-variation.3.0.6
bin/sam-dump
bin/sam-dump-orig.3.0.6
bin/sam-dump.3
bin/sam-dump.3.0.6
bin/sff-dump
bin/sff-dump.3
bin/sff-dump.3.0.6
bin/sra-info
bin/sra-info.3
bin/sra-info.3.0.6
bin/sra-pileup
bin/sra-pileup-orig.3.0.6
bin/sra-pileup.3
bin/sra-pileup.3.0.6
bin/sra-search
bin/sra-search.3
bin/sra-search.3.0.6
bin/sra-stat
bin/sra-stat.3
bin/sra-stat.3.0.6
bin/srapath
bin/srapath-orig.3.0.6
bin/srapath.3
bin/srapath.3.0.6
bin/sratools
bin/sratools.3
bin/sratools.3.0.6
bin/test-sra
bin/test-sra.3
bin/test-sra.3.0.6
bin/var-expand
bin/var-expand.3
bin/var-expand.3.0.6
bin/vdb-config
bin/vdb-config.3
bin/vdb-config.3.0.6
bin/vdb-decrypt
bin/vdb-decrypt.3
bin/vdb-decrypt.3.0.6
bin/vdb-dump
bin/vdb-dump-orig.3.0.6
bin/vdb-dump.3
bin/vdb-dump.3.0.6
bin/vdb-encrypt
bin/vdb-encrypt.3
bin/vdb-encrypt.3.0.6
bin/vdb-validate
bin/vdb-validate.3
bin/vdb-validate.3.0.6
include/ncbi-vdb/NGS.hpp
include/ngs/Alignment.hpp
include/ngs/AlignmentIterator.hpp
include/ngs/ErrorMsg.hpp
include/ngs/Fragment.hpp
include/ngs/FragmentIterator.hpp
include/ngs/Package.hpp
include/ngs/Pileup.hpp
include/ngs/PileupEvent.hpp
include/ngs/PileupEventIterator.hpp
include/ngs/PileupIterator.hpp
include/ngs/Read.hpp
include/ngs/ReadCollection.hpp
include/ngs/ReadGroup.hpp
include/ngs/ReadGroupIterator.hpp
include/ngs/ReadIterator.hpp
include/ngs/Reference.hpp
include/ngs/ReferenceIterator.hpp
include/ngs/ReferenceSequence.hpp
include/ngs/Statistics.hpp
include/ngs/StringRef.hpp
include/ngs/adapter/AlignmentItf.hpp
include/ngs/adapter/ErrorMsg.hpp
include/ngs/adapter/FragmentItf.hpp
include/ngs/adapter/PileupEventItf.hpp
include/ngs/adapter/PileupItf.hpp
include/ngs/adapter/ReadCollectionItf.hpp
include/ngs/adapter/ReadGroupItf.hpp
include/ngs/adapter/ReadItf.hpp
include/ngs/adapter/Refcount.hpp
include/ngs/adapter/ReferenceItf.hpp
include/ngs/adapter/ReferenceSequenceItf.hpp
include/ngs/adapter/StatisticsItf.hpp
include/ngs/adapter/StringItf.hpp
include/ngs/adapter/defs.h
include/ngs/inl/Alignment.hpp
include/ngs/inl/AlignmentIterator.hpp
include/ngs/inl/Fragment.hpp
include/ngs/inl/FragmentIterator.hpp
include/ngs/inl/Package.hpp
include/ngs/inl/Pileup.hpp
include/ngs/inl/PileupEvent.hpp
include/ngs/inl/PileupEventIterator.hpp
include/ngs/inl/PileupIterator.hpp
include/ngs/inl/Read.hpp
include/ngs/inl/ReadCollection.hpp
include/ngs/inl/ReadGroup.hpp
include/ngs/inl/ReadGroupIterator.hpp
include/ngs/inl/ReadIterator.hpp
include/ngs/inl/Reference.hpp
include/ngs/inl/ReferenceIterator.hpp
include/ngs/inl/ReferenceSequence.hpp
include/ngs/inl/Statistics.hpp
include/ngs/inl/StringRef.hpp
include/ngs/itf/AlignmentItf.h
include/ngs/itf/AlignmentItf.hpp
include/ngs/itf/ErrBlock.h
include/ngs/itf/ErrBlock.hpp
include/ngs/itf/ErrorMsg.hpp
include/ngs/itf/FragmentItf.h
include/ngs/itf/FragmentItf.hpp
include/ngs/itf/PackageItf.hpp
include/ngs/itf/PileupEventItf.h
include/ngs/itf/PileupEventItf.hpp
include/ngs/itf/PileupItf.h
include/ngs/itf/PileupItf.hpp
include/ngs/itf/ReadCollectionItf.h
include/ngs/itf/ReadCollectionItf.hpp
include/ngs/itf/ReadGroupItf.h
include/ngs/itf/ReadGroupItf.hpp
include/ngs/itf/ReadItf.h
include/ngs/itf/ReadItf.hpp
include/ngs/itf/Refcount.h
include/ngs/itf/Refcount.hpp
include/ngs/itf/ReferenceItf.h
include/ngs/itf/ReferenceItf.hpp
include/ngs/itf/ReferenceSequenceItf.h
include/ngs/itf/ReferenceSequenceItf.hpp
include/ngs/itf/StatisticsItf.h
include/ngs/itf/StatisticsItf.hpp
include/ngs/itf/StringItf.h
include/ngs/itf/StringItf.hpp
include/ngs/itf/VTable.h
include/ngs/itf/VTable.hpp
include/ngs/itf/defs.h
include/ngs/unix/arm64/atomic32.h
include/ngs/unix/fat86/atomic32.h
include/ngs/unix/i386/atomic32.h
include/ngs/unix/x86_64/atomic32.h
include/ngs/win/atomic32.h
include/ngs/win/stdbool.h
jar/ngs-doc.jar
jar/ngs-examples.jar
jar/ngs-java.jar
jar/ngs-src.jar
lib64/libncbi-ngs-c++-static.a
lib64/libncbi-ngs-c++.a
lib64/libncbi-ngs-c++.a.3
lib64/libncbi-ngs-c++.a.3.0.6
lib64/libncbi-ngs-static.a
lib64/libncbi-ngs.a
lib64/libncbi-ngs.a.3
lib64/libncbi-ngs.a.3.0.6
lib64/libncbi-ngs.so
lib64/libncbi-ngs.so.3
lib64/libncbi-ngs.so.3.0.6
lib64/libngs-c++-static.a
lib64/libngs-c++.a
lib64/libngs-c++.a.3
lib64/libngs-c++.a.3.0.6
lib64/libngs-c++.so
lib64/libngs-c++.so.3
lib64/libngs-c++.so.3.0.6
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/Makefile
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/PileupTest.cpp
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/README.txt
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/RefTest.cpp
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